SNP Profiles of PA 195 [PER] View Data

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_Input profile	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
1._RUQ_1642	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
2._PA_195_[PER]	GG	AT	AC	GG	CC	CC	_	GG	CC	AA	GG	AA	AA	CC
3._RUQ_1642	_	_	AC	GG	CC	CC	CC	GG	CC	AA	_	AA	AA	CC
4._RUQ_1642	_	_	AC	GG	CC	CC	CC	GG	CC	AA	_	AA	AA	CC
5._PA_195_[PER]	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
6._PA_195_[PER]	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
7._PA_195_[PER]	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
8._PA_195_[PER]	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
9._GC-05-166-4-19	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
10._GC-05-166-4-19	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
11._GC-05-166-4-19	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
12._GC-05-166-4-19	GG	AT	AC	GG	CC	CC	CC	GG	CC	AA	GG	AA	AA	CC
13._GC-05-166-4-19	GG	AT	AC	CC	GG	CC	GG	GG	GG	AA	GG	_	AA	_
14._RUQ_1642	GG	AT	AC	CC	GG	CC	GG	GG	GG	AA	GG	_	AA	_

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_Input profile	GG	CG	CC	TT	AA	GG	GG	CC	CC	CG	AA	CC	AG	CC
1._RUQ_1642	GG	CG	CC	TT	AA	GG	GG	CC	CC	CG	AA	CC	AG	CC
2._PA_195_[PER]	GG	CG	CC	TT	AA	GG	GG	CC	CC	CG	AA	CC	AG	CC
3._RUQ_1642	GG	CG	CC	TT	_	GG	GG	CC	_	_	_	_	AG	CC
4._RUQ_1642	GG	CG	CC	TT	_	GG	GG	CC	_	_	_	_	AG	CC
5._PA_195_[PER]	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
6._PA_195_[PER]	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
7._PA_195_[PER]	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
8._PA_195_[PER]	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
9._GC-05-166-4-19	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
10._GC-05-166-4-19	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
11._GC-05-166-4-19	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
12._GC-05-166-4-19	GG	CG	CC	TT	AG	GG	GG	CC	CC	CG	AA	CC	AG	CC
13._GC-05-166-4-19	CC	CG	CC	AA	_	CC	CC	GG	GG	CG	AA	GG	AG	GG
14._RUQ_1642	CC	CG	CC	AA	_	CC	CC	GG	GG	CG	AA	GG	AG	GG

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_Input profile	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
1._RUQ_1642	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
2._PA_195_[PER]	AG	AA	_	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
3._RUQ_1642	_	_	_	_	TT	_	_	_	CC	CG	GG	_	X_X	X_X
4._RUQ_1642	_	_	_	_	TT	_	_	_	CC	CG	GG	_	X_X	X_X
5._PA_195_[PER]	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
6._PA_195_[PER]	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
7._PA_195_[PER]	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
8._PA_195_[PER]	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
9._GC-05-166-4-19	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
10._GC-05-166-4-19	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
11._GC-05-166-4-19	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
12._GC-05-166-4-19	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
13._GC-05-166-4-19	AG	AA	_	_	AA	GG	CC	AA	GG	CG	GG	GG	X_X	X_X
14._RUQ_1642	AG	AA	_	_	AA	GG	CC	AA	GG	CG	GG	GG	X_X	X_X

Input profile: PA_195_[PER] RUQ_1642

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._PA_195_[PER] RUQ_1642

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_195_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B C165 T1

Dapeng Zhang, 2016

3._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._PA_195_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._PA_195_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 1 > FP

Dapeng Zhang, 2016

7._PA_195_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 2 > FP

Dapeng Zhang, 2016

8._PA_195_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 5 > FP

Dapeng Zhang, 2016

9._PA_195_[PER] GC-05-166-4-19

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._PA_195_[PER] GC-05-166-4-19

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

11._PA_195_[PER] GC-05-166-4-19

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._PA_195_[PER] GC-05-166-4-19

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

13._PA_195_[PER] GC-05-166-4-19

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 4, Rep: 19, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_195_[PER] RUQ_1642

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520